By applying repeated 3-fold cross-validation within the stepwise regression, we could lower the complexity of linear regression models for predicting drug resistance while retaining performance on unseen data. The described 3F method thus proves to be a tractable approach when interpretation of the linear model is an objective. 4 days ago · Update the question so it's on-topic for Cross Validated. Closed 3 hours ago. I'm trying to figure out how the step function in R is working. On the other hand the backward stepwise selection seems to work properly, since. Browse other questions tagged r regression stepwise-regression or ask your own question.

R2, RMSE and MAE are used to measure the regression model performance during cross-validation. In the following section, we’ll explain the basics of cross-validation, and we’ll provide practical example using mainly the caret R package. I have a dataset of 162 observations with a 151 different variables and I would like to perform stepwise regression on it, but to also do 10 fold cross validation on it. I have used the package DAAG before in order to perform 10 fold cross validation with multiple linear regression and. K Fold cross-validated stepwise regression using same or different random division before each removal step: ETR model. Different choices of fold K were evaluated for the ETR model. The goal was to find a linear regression model with better SBC than the reference and at. Stepwise logistic regression consists of automatically selecting a reduced number of predictor variables for building the best performing logistic regression model. Read more at Chapter @refstepwise-regression. This chapter describes how to compute the stepwise logistic regression in R. Data set.

Choose a combination of variables using cross validation and stepwise regression.Two of them, PB1 and PB2, have to be in the model. Among the remaining eight variables, I want to choose one among V0, V1, V2 and V3 and one among L0, L1, L2 and L3 that better fit the model. Meanwhile, I also want to cross validate the model. I'm working on a stepwise multinomial logistic regression in R, using the multinom function from the nnet package and the stepAIC function from MASS. Despite pre-selecting a set of variables using individual logistic regressions which uses the full parallel potential of the optimized BLAS and LAPACK libraries that I've gotten from the Microsoft R Open installation, I still have 80 variables to work with. This should probably be in a stats forum stats.stackexchange but briefly there are a number of considerations. The main one is that when comparing two models they need to be fitted on the same dataset i.e you need to be able to nest the models within each other. repeated 10-fold cross-validation. 10-fold cross-validation involves dividing your data into ten parts, then taking turns to fit the model on 90% of the data and using that model to predict the remaining 10%. The average of the 10 goodness of fit statistics becomes your estimate of the actual goodness of fit.

You should be able to run a stepwise regression in caret::train with method=glmStepAIC from the MASS package. For details, see the list of models supported by caret on the caret documentation website. The caret test cases for this model are accessible on the caret GitHub repository. Jul 19, 2016 · Since you are dealing with supervised learning, the most accurate and reliable way to do a cross validation is the technique called K-fold cross validation,. Nov 29, 2017 · how to perform cross-validation using simple linear regression and some problems associated with this 1 The problem of using simple in-sample metrics for model seelction with a univariate example When dealing with a regression model, we are often interested in determining which covariates to keep in the model and which to through away.

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